maplab data

[20160310] Colon cancer NSUMA extended data

Data appendices of Jordà M et al. The epigenetic landscape of Alu repeats delineates the structural and functional genomic architecture of colon cancer cells. Genome Res 2016 (raw data at GEO GSE72751).

• Appendix 1. NSUMA canonical amplicons (9.2 MB, ZIP-compressed Excel)
• Appendix 2. Differential representation of NSUMA canonical amplicons in sample comparisons (41 MB, ZIP-compressed Excel)
• Appendix 3. DNA methylation of Alus analyzed by WGBS (39 MB, ZIP-compressed Excel)
• Appendix 4. CGH data (80 KB, ZIP-compressed Excel)
• Appendix 5. Links to the UCSC Genome Browser custom tracks and bed files (114 KB, PDF document)
• Appendix 6. HMAR regions (NSUMA) (675 KB, ZIP-compressed Excel)
• Appendix 7. HMAR regions (WGBS) (220 KB, ZIP-compressed Excel)
• Appendix 8. Transcriptomic and epigenetic features of Alu repeats (RRBS subset) (1.7 MB, ZIP-compressed Excel)